Package: pubmedtk 1.0.4
pubmedtk: 'Pubmed' Toolkit
Provides various functions for retrieving and interpreting information from 'Pubmed' via the API, <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
Authors:
pubmedtk_1.0.4.tar.gz
pubmedtk_1.0.4.zip(r-4.7)pubmedtk_1.0.4.zip(r-4.6)pubmedtk_1.0.4.zip(r-4.5)
pubmedtk_1.0.4.tgz(r-4.6-any)pubmedtk_1.0.4.tgz(r-4.5-any)
pubmedtk_1.0.4.tar.gz(r-4.7-any)pubmedtk_1.0.4.tar.gz(r-4.6-any)
pubmedtk_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pubmedtk/json (API)
NEWS
| # Install 'pubmedtk' in R: |
| install.packages('pubmedtk', repos = c('https://bgcarlisle.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bgcarlisle/pubmedtk/issues
Last updated from:13e1b8e2f0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 120 | ||
| source / vignettes | OK | 161 | ||
| linux-release-x86_64 | OK | 119 | ||
| macos-release-arm64 | OK | 193 | ||
| macos-oldrel-arm64 | OK | 175 | ||
| windows-devel | OK | 92 | ||
| windows-release | OK | 59 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 98 |
Exports:get_metadata_from_one_pmidget_metadata_from_pmidsget_pmids_from_one_searchget_pmids_from_searchesintersection_check
Dependencies:askpassassertthatclicurldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangstringistringrsystibbletidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Downloads metadata from Pubmed API for a single provided PMID and exports | get_metadata_from_one_pmid |
| Downloads metadata from Pubmed API for a column of PMID's in a data frame | get_metadata_from_pmids |
| Returns a list of PMID's for a provided Pubmed search | get_pmids_from_one_search |
| Downloads PMID results for a column of Pubmed search queries in a data frame | get_pmids_from_searches |
| Checks a column of PMID's for whether or not they would appear in a Pubmed search result. | intersection_check |
