Package: pubmedtk 1.0.4
pubmedtk: 'Pubmed' Toolkit
Provides various functions for retrieving and interpreting information from 'Pubmed' via the API, <https://www.ncbi.nlm.nih.gov/home/develop/api/>.
Authors:
pubmedtk_1.0.4.tar.gz
pubmedtk_1.0.4.zip(r-4.5)pubmedtk_1.0.4.zip(r-4.4)pubmedtk_1.0.4.zip(r-4.3)
pubmedtk_1.0.4.tgz(r-4.4-any)pubmedtk_1.0.4.tgz(r-4.3-any)
pubmedtk_1.0.4.tar.gz(r-4.5-noble)pubmedtk_1.0.4.tar.gz(r-4.4-noble)
pubmedtk_1.0.4.tgz(r-4.4-emscripten)pubmedtk_1.0.4.tgz(r-4.3-emscripten)
pubmedtk.pdf |pubmedtk.html✨
pubmedtk/json (API)
NEWS
| # Install 'pubmedtk' in R: |
| install.packages('pubmedtk', repos = c('https://bgcarlisle.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bgcarlisle/pubmedtk/issues
Last updated 9 months agofrom:33e139e5cf. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 14 2024 |
| R-4.5-win | OK | Nov 14 2024 |
| R-4.5-linux | OK | Nov 14 2024 |
| R-4.4-win | OK | Nov 14 2024 |
| R-4.4-mac | OK | Nov 14 2024 |
| R-4.3-win | OK | Nov 14 2024 |
| R-4.3-mac | OK | Nov 14 2024 |
Exports:get_metadata_from_one_pmidget_metadata_from_pmidsget_pmids_from_one_searchget_pmids_from_searchesintersection_check
Dependencies:askpassassertthatclicurldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangstringistringrsystibbletidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Downloads metadata from Pubmed API for a single provided PMID and exports | get_metadata_from_one_pmid |
| Downloads metadata from Pubmed API for a column of PMID's in a data frame | get_metadata_from_pmids |
| Returns a list of PMID's for a provided Pubmed search | get_pmids_from_one_search |
| Downloads PMID results for a column of Pubmed search queries in a data frame | get_pmids_from_searches |
| Checks a column of PMID's for whether or not they would appear in a Pubmed search result. | intersection_check |
